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SRX19210618: GSM7008703: MAHA_3ws; Lathyrus sativus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 28.6M spots, 7.2G bases, 2.3Gb downloads

External Id: GSM7008703_r1
Submitted by: John Innes Centre
Study: Sequence data for annotation and scaffolding of the Lathyrus sativus LS007 Rbp1.0 genome assembly
show Abstracthide Abstract
This dataset includes RNAseq data of 7 tissues/developmental stages of Lathyrus sativus genotype LSWT11 and 2 tissues with drought- and well-watered treatments of Lathyrus sativus genotypes LS007 and Mahateora. These data were used in the functional annotation pipeline of the Rbp1.0 genome assembly of LS007. The multi-tissue transcriptome was also used to support gene candidate identification by mRNA abundance. Also included is Hi-C sequencing data used to scaffold the assembly into pseudochromosomes Overall design: RNAseq data to inform a genome annotation pipeline - replication of multi-tissue transcriptome as shown below, three replicates for each genotype/treatment combination in drought experiment; RNAseq for RNA read counting to support gene candidate identification, replication as shown below, HiC for scaffolding of genome assembly
Sample: MAHA_3ws
SAMN32953615 • SRS16617944 • All experiments • All runs
Library:
Name: GSM7008703
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Rneasy Plant Mini Kit Qiagen TruSeq RNA
Runs: 1 run, 28.6M spots, 7.2G bases, 2.3Gb
Run# of Spots# of BasesSizePublished
SRR2326639028,581,8567.2G2.3Gb2023-01-31

ID:
26413311

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